Description Usage Arguments Value Author(s)
function of searching for the next grouping given deleted SNPs
| 1 | 
| lib | the alleles library contains allele sequences for those only appear in the case and control samples | 
| lib.names | the corresponding names of the alleles | 
| case.sub | case subjects, two columns for two haplotypes | 
| ctl.sub | control subjects, two columns for two haplotypes | 
| aic.now | aic for the current model | 
| dev.now | deviance for the current model | 
| df.now | degree of freedom for the current model | 
| rank | numbers of pairs with top similarity scores to be investigate if FALSE, then deviance is calculated for the step-wise merger, then option "alpha" and "step" is used | 
| cut | cutoff for similarity score to be consider, default is -1, means all scores above 0 | 
| delete.snp | a vector of position of deleted SNPs | 
| ref | allele names for the reference level, the default reference level (ref="NA") is the most common allelels | 
| alpha | family-wise error, used for deviance only | 
| step | index for how many deletions have been carried so far | 
| del  | position of deleted SNPs | 
| aic  | AIC | 
| df  | degree of freedom | 
| dev  | deviance | 
| stop  | 1: no merge found | 
| record  | the record of the searching path | 
Xin Huang
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