Description Usage Format Examples

DRB1 cDNA sequences, with 0 denote the same as reference (DRB1*0101)

1 |

A data frame with 10 DRB1 alleles (those unique alleles in cases + controls) on the following 92 nucleic acid bases. Column names denote the amino acid position. e.g., X.25.1 means the first nucleic acid base on the -25th amino acid, X9.2 means the second nucleic acid base on the 9th amino acid of DRB1 allele, etc

`X.25.1`

a factor with levels

`0`

`G`

`X.24`

a factor with levels

`0`

`T`

`X.17`

a factor with levels

`0`

`G`

`X.16.1`

a factor with levels

`0`

`T`

`X.16.2`

a factor with levels

`0`

`T`

`X.1`

a factor with levels

`0`

`T`

`X4`

a factor with levels

`0`

`A`

`X4.1`

a factor with levels

`0`

`A`

`X8`

a factor with levels

`0`

`C`

`X9`

a factor with levels

`0`

`A`

`C`

`G`

`X9.1`

a factor with levels

`0`

`A`

`X9.2`

a factor with levels

`0`

`A`

`X10.2`

a factor with levels

`0`

`C`

`X11`

a factor with levels

`0`

`A`

`G`

`T`

`X11.1`

a factor with levels

`0`

`A`

`C`

`G`

`X12.2`

a factor with levels

`0`

`3`

`A`

`C`

`X13`

a factor with levels

`0`

`A`

`C`

`G`

`X13.1`

a factor with levels

`0`

`A`

`C`

`G`

`X13.2`

a factor with levels

`0`

`G`

`X14`

a factor with levels

`0`

`A`

`T`

`X14.2`

a factor with levels

`0`

`G`

`X16`

a factor with levels

`0`

`A`

`T`

`X18.2`

a factor with levels

`0`

`T`

`X19.2`

a factor with levels

`0`

`C`

`X21.2`

a factor with levels

`0`

`A`

`C`

`X23`

a factor with levels

`0`

`3`

`4`

`A`

`G`

`X23.2`

a factor with levels

`0`

`T`

`X24.2`

a factor with levels

`0`

`A`

`X26.1`

a factor with levels

`0`

`A`

`C`

`G`

`X26.2`

a factor with levels

`0`

`A`

`C`

`T`

`X28`

a factor with levels

`0`

`C`

`X28.2`

a factor with levels

`0`

`C`

`G`

`X30`

a factor with levels

`0`

`C`

`G`

`X30.1`

a factor with levels

`0`

`A`

`C`

`T`

`X30.2`

a factor with levels

`0`

`T`

`X31`

a factor with levels

`0`

`G`

`T`

`X32`

a factor with levels

`0`

`C`

`G`

`X32.2`

a factor with levels

`0`

`C`

`X33`

a factor with levels

`0`

`C`

`X34.2`

a factor with levels

`0`

`G`

`X35.2`

a factor with levels

`0`

`A`

`X37`

a factor with levels

`0`

`A`

`C`

`G`

`X37.1`

a factor with levels

`0`

`2`

`A`

`T`

`X37.2`

a factor with levels

`0`

`G`

`X43.2`

a factor with levels

`0`

`T`

`X44.2`

a factor with levels

`0`

`A`

`C`

`X47.1`

a factor with levels

`0`

`2`

`T`

`X47.2`

a factor with levels

`0`

`T`

`X48.2`

a factor with levels

`0`

`A`

`C`

`X51.2`

a factor with levels

`0`

`A`

`C`

`T`

`X52.2`

a factor with levels

`0`

`A`

`X55.2`

a factor with levels

`0`

`C`

`X57`

a factor with levels

`0`

`A`

`X57.1`

a factor with levels

`0`

`C`

`G`

`T`

`X57.2`

a factor with levels

`0`

`A`

`C`

`G`

`X58.2`

a factor with levels

`0`

`G`

`T`

`X59.2`

a factor with levels

`0`

`A`

`C`

`X60.1`

a factor with levels

`0`

`2`

`C`

`X67`

a factor with levels

`0`

`2`

`A`

`G`

`T`

`X67.2`

a factor with levels

`0`

`T`

`X68.2`

a factor with levels

`0`

`A`

`X69.2`

a factor with levels

`0`

`A`

`X70.2`

a factor with levels

`0`

`G`

`X70.3`

a factor with levels

`0`

`2`

`G`

`X70.4`

a factor with levels

`0`

`A`

`C`

`X71`

a factor with levels

`0`

`G`

`T`

`X71.1`

a factor with levels

`0`

`2`

`A`

`C`

`X72.2`

a factor with levels

`0`

`C`

`T`

`X73.1`

a factor with levels

`0`

`G`

`T`

`X73.2`

a factor with levels

`0`

`A`

`T`

`X74`

a factor with levels

`0`

`A`

`C`

`X74.1`

a factor with levels

`0`

`2`

`A`

`G`

`T`

`X75.2`

a factor with levels

`0`

`A`

`X78`

a factor with levels

`0`

`C`

`G`

`X78.1`

a factor with levels

`0`

`T`

`X78.2`

a factor with levels

`0`

`A`

`G`

`T`

`X83.2`

a factor with levels

`0`

`T`

`X86.1`

a factor with levels

`0`

`A`

`C`

`T`

`X86.2`

a factor with levels

`0`

`G`

`X90.2`

a factor with levels

`0`

`G`

`X93`

a factor with levels

`0`

`A`

`X95.2`

a factor with levels

`0`

`C`

`X96`

a factor with levels

`0`

`C`

`T`

`X96.2`

a factor with levels

`0`

`A`

`T`

`X98`

a factor with levels

`0`

`G`

`X120.1`

a factor with levels

`0`

`A`

`X140`

a factor with levels

`0`

`A`

`X179.2`

a factor with levels

`0`

`C`

`X181.2`

a factor with levels

`0`

`A`

`X206.2`

a factor with levels

`0`

`T`

`X217`

a factor with levels

`0`

`T`

`X233.1`

a factor with levels

`0`

`G`

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