HLAatlas: Boundary Positions of Exons, Introns and UTRs in Amino Acid,...
In HLAtools: Toolkit for HLA Immunogenomics
HLAatlas R Documentation
Boundary Positions of Exons, Introns and UTRs in Amino Acid, cDNA and gDNA Alignments
Description
A list object of sub-lists of R dataframes (atlases) for each locus with a protein (prot), cDNA (nuc), and gDNA (gen) alignment. Each atlas identifies the position of the exon (E), intron (I) or UTR (U) gene-feature boundaries in an alignment. Boundaries for non-standard hybrid (H), join (J), novel (N) and segment (S) features may be included in gene fragment and pseudogene atlases.
This object is built by the atlasFull() function.
Usage
data(HLAatlas)
Format
A list of 4 elements that include the gene features boundaries in each ANHIG/IMGTHLA sequence alignment.
(prot: peptide-alignment atlases)
(nuc: cDNA- and codon-alignment atlases)
(gen: gDNA-alignment atlases)
(version: The IPD-IMGT/HLA Database release version under which these data were generated)
Source
https://github.com/ANHIG/IMGTHLA/tree/Latest/alignments
HLAtools documentation built on June 8, 2025, 12:24 p.m.
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| HLAatlas | R Documentation |
Boundary Positions of Exons, Introns and UTRs in Amino Acid, cDNA and gDNA Alignments
Description
A list object of sub-lists of R dataframes (atlases) for each locus with a protein (prot), cDNA (nuc), and gDNA (gen) alignment. Each atlas identifies the position of the exon (E), intron (I) or UTR (U) gene-feature boundaries in an alignment. Boundaries for non-standard hybrid (H), join (J), novel (N) and segment (S) features may be included in gene fragment and pseudogene atlases. This object is built by the atlasFull() function.
Usage
data(HLAatlas)
Format
A list of 4 elements that include the gene features boundaries in each ANHIG/IMGTHLA sequence alignment.
(prot: peptide-alignment atlases)
(nuc: cDNA- and codon-alignment atlases)
(gen: gDNA-alignment atlases)
(version: The IPD-IMGT/HLA Database release version under which these data were generated)
Source
https://github.com/ANHIG/IMGTHLA/tree/Latest/alignments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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