atlasFull: Generate a Complete set of Protein, Coding nucleotide and...
In HLAtools: Toolkit for HLA Immunogenomics
atlasFull R Documentation
Generate a Complete set of Protein, Coding nucleotide and Genomic Nucleotide Atlases
Description
Applies atlasMaker() to build a set of 'atlases' identifying the gene-feature (exon, intron, and UTR) boundaries in the protein, coding nucleotide, and genomic nucleotide alignments of all HLA loci.
Usage
atlasFull(version = "Latest")
Arguments
version
A character string identifying the version of the ANHIG/IMGTHLA Github repository used to generate atlases. The default value, "Latest", generates an atlas for the most recent IPD-IMGT/HLA Database release.
Value
A list object containing a list of data frames of protein (prot), coding nucleotide (nuc), and genomic nucleotide (gen) atlases for all genes in the IPD-IMGT/HLA Database release, along with a character vector identifying the pertinent IPD-IMGT/HLA Database release.
Note
Data informing the atlases were downloaded from the ANHIG/IMGTHLA Github repository.
For internal HLAtools use.
HLAtools documentation built on June 8, 2025, 12:24 p.m.
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| atlasFull | R Documentation |
Generate a Complete set of Protein, Coding nucleotide and Genomic Nucleotide Atlases
Description
Applies atlasMaker() to build a set of 'atlases' identifying the gene-feature (exon, intron, and UTR) boundaries in the protein, coding nucleotide, and genomic nucleotide alignments of all HLA loci.
Usage
atlasFull(version = "Latest")
Arguments
version |
A character string identifying the version of the ANHIG/IMGTHLA Github repository used to generate atlases. The default value, "Latest", generates an atlas for the most recent IPD-IMGT/HLA Database release. |
Value
A list object containing a list of data frames of protein (prot), coding nucleotide (nuc), and genomic nucleotide (gen) atlases for all genes in the IPD-IMGT/HLA Database release, along with a character vector identifying the pertinent IPD-IMGT/HLA Database release.
Note
Data informing the atlases were downloaded from the ANHIG/IMGTHLA Github repository.
For internal HLAtools use.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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