Jaccard3: Jaccard3

In HTGM3D: Three Dimensional High Throughput 'GoMiner'

Jaccard3

Description

compute the number of genes in the intersection of categories from 3 ontology branches

Usage

Jaccard3(dir, m, thresh1 = 3, thresh3 = 3, verbose = 2)

Arguments

dir	character string full path name to the directory acting as result repository
m	return value of pruneCatGenes()
thresh1	parameter passed to Jaccard3()
thresh3	parameter passed to Jaccard3()
verbose	integer vector representing vprint classes

Value

returns matrix tabulating genes in the intersection of categories from 3 ontology branches also has side effect of saving files containing those genes

Examples

#load("data/x_m11.RData")
Jaccard3(tempdir(),x_m11,thresh1=3,thresh3=3,verbose=1:5)

HTGM3D documentation built on June 8, 2025, 11:06 a.m.