insertCatSize: insertCatSize

In HTGM3D: Three Dimensional High Throughput 'GoMiner'

insertCatSize

Description

compute fraction of total genes in the entire ontology that map to each category, and insert column into matrix mat

Usage

insertCatSize(mat, GOGOA3)

Arguments

mat	return value of Jaccard3()
GOGOA3	return value of subsetGOGOA()

Value

returns augmented version of matrix mat

Examples

## Not run: 
# GOGOA3.RData is too large to include in the R package
# so I need to load it from a file that is not in the package.
# Since this is in a file in my own file system, I could not
# include this as a regular example in the package.
# you can generate it using the package 'minimalistGODB'
# or you can retrieve it from https://github.com/barryzee/GO/tree/main/databases
load("/Users/barryzeeberg/personal/GODB_RDATA/goa_human/GOGOA3_goa_human.RData")

mat2<-insertCatSize(x_mat,GOGOA3)

## End(Not run)

HTGM3D documentation built on June 8, 2025, 11:06 a.m.