boot.ppDeltaD | Bootstrapping test of pairwise allelic differentiation (Delta... |
CorDdPlot | Plot the relation between genetic differentiation (Delta D)... |
COR_DeltaDd | Function for calculating pairwise Delta D and correlation... |
COR_Fstd | Function for calculating pairwise Fst and correlation... |
DeltaDcorplot | Plot correlation matrix for pairwise Delta D |
HierAr | Calculating hierarchical allelic richness |
HierD | Function for calculating and decomposing genetic diversity... |
HierDjost | Hierarchical DJost |
HierFst | Function for calculating hierarchical genetic differentiation... |
HierHe | Function for calculating hierarchical heterozygosity |
HierJd | Hierarchical Jaccard dissimilarity |
Hierpertest | Test the significance among aggregates (regions,... |
IDIP | Function for decomposing diversity (genetic or species... |
Ldisper | Test significance of dispersion among subaggregate within... |
permutate.DeltaD | Permutation test for allelic differentiation (Delta D) |
plot.aggregates | Plot aggregates with dispersions (variances) |
plotdiff1 | Plot genetic differentiation (Delta D) across loci |
plot.pcoa.aggregate | Draw the aggregation plot for allelic differentiation |
print.boot.ppDeltaD | Print the bootstrapping result for pairwise allelic... |
pwag.permutest | Permutation test for allelic differentiation (Delta D) among... |
pwDeltaD | Pairwise Shannon differentiation (Delta D) |
qD | Function for calculating genetic diversity profile (q=0,1,2) |
qDplot | Plot the genetic diversity profiles (q=0,1,2) |
Str | Function for generating the structure for HierDpart format |
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