Description Usage Arguments Details Value Author(s) References Examples
This function calculates hierarchical genetic Jaccard dissimilarity
1 | HierJd(f, ncode, nreg, r)
|
f |
Input file, genepop format |
ncode |
The integer used to code an allele |
nreg |
The number of aggregates (regions) |
r |
The number of subaggregates in each aggregate |
This function partitions genetic Jaccard dissimilarity into different hierarchical levels
Jdpop |
Jaccard dissimilarity between subaggregates |
Jdr |
Jaccard dissimilarity between aggregates |
HierJd |
The partitioning of Jaccard dissimilarity at different hierarchical levels |
qinxinghu@gmail.com
Jaccard, P. (1901). Etude comparative de la distribution florale dans une portion des Alpes et des Jura. Bull Soc Vaudoise Sci Nat, 37, 547-579. Jaccard, P. (1912). The distribution of the flora in the alpine zone. 1. New phytologist, 11(2), 37-50.
1 2 3 4 | f <- system.file('extdata',package='HierDpart')
infile <- file.path(f, "Island.gen")
HierJd_Island=HierJd(infile,nreg=4,r=c(7,4,2,3),ncode=3)
print(HierJd_Island)
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