HierDjost: Hierarchical DJost

In HierDpart: Partitioning Hierarchical Diversity and Differentiation Across Metrics and Scales, from Genes to Ecosystems

Description

This function partitions the DJost into hierarchical levels

Usage

HierDjost(x, nreg, r, ncode)

Arguments

x	Input file, genepop format
nreg	The number of aggregates
r	The number of subaggregates in each aggregates
ncode	The integer used to code an allele

Details

This function partitions genetic differentiation, DJost, into different hierarchical levels

Value

HierDjost_perloc	DJost per locus
HieDjost_overall	Overall DJost
pairDjostp	Pairwise DJost between subaggregates (populations)
pairDjostr	Pairwise DJost between aggregates (regions)

Author(s)

[e-mail]

References

Jost, L. O. U. (2008). GST and its relatives do not measure differentiation. Molecular ecology, 17(18), 4015-4026.

Examples

f <- system.file('extdata',package='HierDpart')
infile <- file.path(f, "Island.gen")
HierDjost_Island=HierDjost(infile,nreg=4,r=c(7,4,2,3),ncode=3)
print(HierDjost_Island)

HierDpart documentation built on March 31, 2021, 5:09 p.m.