API for Hmsc
Hierarchical Model of Species Communities
| Global functions | |
|---|---|
| Hmsc | Man page Source code |
| Hmsc-package | Man page |
| HmscRandomLevel | Man page Source code |
| TD | Man page |
| `c.Hmsc` | Source code |
| `getSpeciesFoldPrediction` | Source code |
| `pcomputePredictedValues` | Source code |
| alignPosterior | Man page Source code |
| biPlot | Man page Source code |
| c.Hmsc | Man page |
| combineParameters | Source code |
| computeAssociations | Man page Source code |
| computeDataParameters | Man page Source code |
| computeInitialParameters | Man page Source code |
| computePredictedValues | Man page Source code |
| computeVariancePartitioning | Man page Source code |
| computeWAIC | Man page Source code |
| constructGradient | Man page Source code |
| constructKnots | Man page Source code |
| convertToCodaObject | Man page Source code |
| createPartition | Man page Source code |
| evaluateModelFit | Man page Source code |
| get1prediction | Source code |
| getPostEstimate | Man page Source code |
| pcomputePredictedValues | Man page |
| plotBeta | Man page Source code |
| plotGamma | Man page Source code |
| plotGradient | Man page |
| plotVariancePartitioning | Man page |
| poolMcmcChains | Man page Source code |
| predict.Hmsc | Man page Source code |
| predictLatentFactor | Man page Source code |
| prepareGradient | Man page Source code |
| print.Hmsc | Source code |
| print.HmscRandomLevel | Source code |
| sampleMcmc | Man page Source code |
| samplePrior | Man page Source code |
| setPriors | Man page Source code |
| setPriors.Hmsc | Man page Source code |
| setPriors.HmscRandomLevel | Man page Source code |
| updateAlpha | Source code |
| updateBetaLambda | Source code |
| updateBetaSel | Source code |
| updateEta | Source code |
| updateGamma2 | Source code |
| updateGammaEta | Source code |
| updateGammaV | Source code |
| updateInvSigma | Source code |
| updateLambdaPriors | Source code |
| updateLatentLoadingOrder | Source code |
| updateNf | Source code |
| updateRho | Source code |
| updateZ | Source code |
| updatewRRR | Source code |
| updatewRRRPriors | Source code |
