Files in Hmsc

Hierarchical Model of Species Communities

README.md R/updateBetaLambda.R R/computeWAIC.R R/createPartition.R R/setPriors.Hmsc.R R/computeInitialParameters.R R/biPlot.R R/updatewRRRPriors.R R/samplePrior.R R/predictLatentFactor.R R/updateRho.R R/computeAssociations.R R/evaluateModelFit.R R/updateGammaV.R R/HmscRandomLevel.R R/Hmsc.R R/poolMcmcChains.R R/updatewRRR.R R/constructKnots.R R/alignPosterior.R R/computeDataParameters.R R/updateNf.R R/setPriors.HmscRandomLevel.R R/data.R R/plotBeta.R R/predict.R R/updateGammaEta.R R/computeVariancePartitioning.R R/plotVariancePartitioning.R R/convertToCodaObject.r R/combineParameters.R R/getPostEstimate.R R/plotGradient.R R/computePredictedValues.R R/updateInvSigma.R R/sampleMcmc.R R/updateLatentLoadingOrder.R R/print.HmscRandomLevel.R R/updateGamma2.R R/setPriors.R R/constructGradient.R R/plotGamma.R R/c.Hmsc.R R/print.Hmsc.R R/computePredictedValuesParallel.R R/updateZ.R R/updateEta.R R/updateBetaSel.R R/updateLambdaPriors.R R/updateAlpha.R R/prepareGradient.R inst/NEWS.md inst/README.md inst/doc/vignette_1_univariate.pdf inst/doc/vignette_5_performance.pdf inst/doc/vignette_3_multivariate_high.pdf inst/doc/vignette_2_multivariate_low.pdf inst/doc/vignette_4_spatial.pdf tests/testthat.R tests/testthat/test-WAIC.R tests/testthat/test-setPriors.R tests/testthat/test-sampling.R tests/testthat/test-setRL.R tests/testthat/test-initialParameters.R tests/testthat/test-setHmsc.R vignettes/vignette_5_performance.Rmd vignettes/vignette_4_spatial.Rmd vignettes/vignette_1_univariate.Rmd vignettes/makedata.R vignettes/vignette_2_multivariate_low.Rmd vignettes/vignette_3_multivariate_high.Rmd vignettes/load_libraries.R man/evaluateModelFit.Rd man/predictLatentFactor.Rd man/samplePrior.Rd man/constructKnots.Rd man/computeDataParameters.Rd man/alignPosterior.Rd man/setPriors.Rd man/Hmsc.Rd man/computePredictedValues.Rd man/computeInitialParameters.Rd man/predict.Hmsc.Rd man/constructGradient.Rd man/setPriors.HmscRandomLevel.Rd man/TD.Rd man/plotVariancePartitioning.Rd man/plotGamma.Rd man/c.Hmsc.Rd man/Hmsc-package.Rd man/computeVariancePartitioning.Rd man/sampleMcmc.Rd man/computeAssociations.Rd man/setPriors.Hmsc.Rd man/HmscRandomLevel.Rd man/createPartition.Rd man/biPlot.Rd man/poolMcmcChains.Rd man/plotGradient.Rd man/convertToCodaObject.Rd man/computeWAIC.Rd man/plotBeta.Rd man/prepareGradient.Rd man/getPostEstimate.Rd