opt_subpath: opt_subpath

In ICDS: Identification of Cancer Dysfunctional Subpathway with Omics Data

opt_subpath

Description

'opt_subpath' Optimize interested subpathways.If the number of genes shared by the two pathways accounted for more than the Overlap ratio of each pathway genes,then combine two pathways.

Usage

opt_subpath(subpathdata, zz, overlap = 0.6)

Arguments

subpathdata	interested subpathways
zz	a vector of z-scores
overlap	Overlap ratio of each two pathway genes

Value

Optimized subpathway:the number of genes shared by any two pathways accounted for less than the Overlap ratio of each pathway genes.

Examples

zz<-GetExampleData("zzz")
subpathdata<-GetExampleData("subpathdata")
optsubpath<-opt_subpath(subpathdata,zz,overlap=0.6)

ICDS documentation built on Sept. 11, 2024, 6:32 p.m.