spectra_integrator: Spectra Integrator

In IDSL.FSA: Fragmentation Spectra Analysis (FSA)

Spectra Integrator

Description

This function integrates individual m/z peaks from multiple chromatogram scans (spectra) into summed m/z peaks using a mass accuracy or nominal masses.

Usage

spectra_integrator(stackedSpectra, massError = 0, allowedNominalMass = FALSE)

Arguments

stackedSpectra	A matrix of two columns of the stacked spectra. First and second columns should represent m/z and intensity, respectively.
massError	Mass accuracy in Da
allowedNominalMass	c(TRUE, FALSE). Select 'TRUE' only for nominal mass analysis.

Value

A matrix of integrated spectra. First and second columns represent intensity-weighted average m/z and cumulated intensity, respectively.

Examples

data(stackedSpectra)
massError <- 0.005 # Da
Integrated_spectra <- spectra_integrator(stackedSpectra[, 1:2], massError)

IDSL.FSA documentation built on July 9, 2023, 6:45 p.m.