rawEnrichmentAnalysis: Calculate Raw xCell Enrichment Scores
In IOBR: Immune Oncology Biological Research
rawEnrichmentAnalysis R Documentation
Calculate Raw xCell Enrichment Scores
Description
Returns the raw xCell cell types enrichment scores using ssGSEA.
Usage
rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL)
Arguments
expr
Gene expression data matrix with row names as gene symbols.
signatures
GMT object of signatures.
genes
Character vector of genes to use.
file.name
Character string for saving scores. Default is 'NULL'.
Value
Matrix of raw xCell scores.
IOBR documentation built on May 30, 2026, 5:07 p.m.
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| rawEnrichmentAnalysis | R Documentation |
Calculate Raw xCell Enrichment Scores
Description
Returns the raw xCell cell types enrichment scores using ssGSEA.
Usage
rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL)
Arguments
expr |
Gene expression data matrix with row names as gene symbols. |
signatures |
GMT object of signatures. |
genes |
Character vector of genes to use. |
file.name |
Character string for saving scores. Default is 'NULL'. |
Value
Matrix of raw xCell scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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