stad_group: Example Clinical Data for TCGA-STAD Gastric Cancer Analysis
In IOBR: Immune Oncology Biological Research
stad_group R Documentation
Example Clinical Data for TCGA-STAD Gastric Cancer Analysis
Description
A small example dataset demonstrating the clinical data structure required
for TCGA Stomach Adenocarcinoma (STAD) analysis using IOBR package functions.
Contains simulated clinical variables, molecular subtypes, and survival data.
Usage
data(stad_group)
Format
A data frame with patient samples as rows and clinical variables as columns:
- ID
Unique patient identifier (TCGA barcode format)
- stage
AJCC pathological stage (Stage_II, Stage_III, Stage_IV)
- status
Patient vital status (Alive, Dead, NA)
- Lauren
Lauren histological classification (Intestinal, Diffuse,
Mixed)
- subtype
Molecular subtype classification (EBV, GS)
- EBV
Epstein-Barr virus status (Positive, Negative)
- time
Overall survival time in months
- OS_status
Overall survival status (0=alive, 1=dead)
Examples
data(stad_group)
head(stad_group)
IOBR documentation built on May 30, 2026, 5:07 p.m.
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| stad_group | R Documentation |
Example Clinical Data for TCGA-STAD Gastric Cancer Analysis
Description
A small example dataset demonstrating the clinical data structure required for TCGA Stomach Adenocarcinoma (STAD) analysis using IOBR package functions. Contains simulated clinical variables, molecular subtypes, and survival data.
Usage
data(stad_group)
Format
A data frame with patient samples as rows and clinical variables as columns:
- ID
Unique patient identifier (TCGA barcode format)
- stage
AJCC pathological stage (Stage_II, Stage_III, Stage_IV)
- status
Patient vital status (Alive, Dead, NA)
- Lauren
Lauren histological classification (Intestinal, Diffuse, Mixed)
- subtype
Molecular subtype classification (EBV, GS)
- EBV
Epstein-Barr virus status (Positive, Negative)
- time
Overall survival time in months
- OS_status
Overall survival status (0=alive, 1=dead)
Examples
data(stad_group)
head(stad_group)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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