IsoriX: Isoscape Computation and Inference of Spatial Origins using Mixed Models

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Building isoscapes using mixed models and inferring the geographic origin of organisms based on their isotopic ratios. This package is essentially a simplified interface to several other packages. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps using lattice.

Author
Alexandre Courtiol [aut, cre], Fran├žois, Rousset [aut], Stephanie Kramer-Schadt [aut]
Date of publication
2016-09-11 16:32:52
Maintainer
Alexandre Courtiol <alexandre.courtiol@gmail.com>
License
GPL (>= 2)
Version
0.4-1

View on CRAN

Man pages

assignmentdata
Assignment dataset
Calibfit
Fit the calibration model
calibrationdata
Calibration dataset
elevationrastersmall
The raster of world elevation
GetElev
Download an elevation raster from internet
GNIP_Europe
European weather station data
GNIP_Model
The fitted isoscape model for GNIP_Europe
GNIP_World
World-wide weather station data
Isofit
Fit the isoscape model
Isorix
Infer spatial origins
IsoriX-package
Isoscape Computation and Inference of Spatial Origins using...
isorixpalette
Colour palettes for plotting
Isoscape
Predicts the spatial distribution of isotopic values
Isosim
Simulate isotopic values
oceanmask
Mask of world oceans
plot.methods
Plotting functions for IsoriX
print.methods
Print and summary methods for IsoriX
QueryGNIP
Filter the dataset to create an isoscape
RElevate
Prepare the elevation raster
worldcountries
Borders of world countries

Files in this package

IsoriX
IsoriX/inst
IsoriX/inst/CITATION
IsoriX/inst/NEWS.Rd
IsoriX/inst/doc
IsoriX/inst/doc/Saveplot.pdf.asis
IsoriX/inst/doc/Workflow.pdf
IsoriX/inst/doc/Saveplot.pdf
IsoriX/inst/doc/sources_for_Workflow.Rmd
IsoriX/inst/doc/sources_for_Saveplot.Rmd
IsoriX/inst/doc/Workflow.pdf.asis
IsoriX/NAMESPACE
IsoriX/data
IsoriX/data/calibrationdata.rda
IsoriX/data/worldcountries.rda
IsoriX/data/isorixpalette.rda
IsoriX/data/GNIP_Model.rda
IsoriX/data/oceanmask.rda
IsoriX/data/GNIP_World.rda
IsoriX/data/GNIP_Europe.rda
IsoriX/data/isoscapepalette.rda
IsoriX/data/datalist
IsoriX/data/assignmentdata.rda
IsoriX/data/elevationrastersmall.rda
IsoriX/R
IsoriX/R/GetElev.R
IsoriX/R/plot.isoscape.R
IsoriX/R/IsoriX-internal.R
IsoriX/R/print.methods.R
IsoriX/R/Calibfit.R
IsoriX/R/plot.isofit.R
IsoriX/R/plot.calibfit.R
IsoriX/R/RElevate.R
IsoriX/R/Isorix.R
IsoriX/R/Isosim.R
IsoriX/R/Isofit.R
IsoriX/R/Isoscape.R
IsoriX/R/plot.isorix.R
IsoriX/R/QueryGNIP.R
IsoriX/vignettes
IsoriX/vignettes/Saveplot.pdf.asis
IsoriX/vignettes/Workflow.pdf.asis
IsoriX/MD5
IsoriX/build
IsoriX/build/vignette.rds
IsoriX/DESCRIPTION
IsoriX/man
IsoriX/man/QueryGNIP.Rd
IsoriX/man/oceanmask.Rd
IsoriX/man/GNIP_Europe.Rd
IsoriX/man/GNIP_World.Rd
IsoriX/man/print.methods.Rd
IsoriX/man/elevationrastersmall.Rd
IsoriX/man/plot.methods.Rd
IsoriX/man/Isofit.Rd
IsoriX/man/Calibfit.Rd
IsoriX/man/calibrationdata.Rd
IsoriX/man/worldcountries.Rd
IsoriX/man/RElevate.Rd
IsoriX/man/Isorix.Rd
IsoriX/man/GetElev.Rd
IsoriX/man/IsoriX-package.Rd
IsoriX/man/isorixpalette.Rd
IsoriX/man/GNIP_Model.Rd
IsoriX/man/Isoscape.Rd
IsoriX/man/Isosim.Rd
IsoriX/man/assignmentdata.Rd