IsoriX: Isoscape Computation and Inference of Spatial Origins using Mixed Models

Building isoscapes using mixed models and inferring the geographic origin of organisms based on their isotopic ratios. This package is essentially a simplified interface to several other packages. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps using lattice.

Install the latest version of this package by entering the following in R:
install.packages("IsoriX")
AuthorAlexandre Courtiol [aut, cre], Fran├žois Rousset [aut], Stephanie Kramer-Schadt [aut]
Date of publication2017-04-12 13:39:50 UTC
MaintainerAlexandre Courtiol <alexandre.courtiol@gmail.com>
LicenseGPL (>= 2)
Version0.5
https://github.com/courtiol/IsoriX_project/

View on CRAN

Functions

assigndata Man page
calibdata Man page
calibfit Man page
Calibfit Man page
countries Man page
downloadfile Man page
elevraster Man page
Europefit Man page
getelev Man page
GetElev Man page
GNIPdata Man page
isofind Man page
isofit Man page
Isofit Man page
isopalette1 Man page
isopalette2 Man page
Isorix Man page
IsoriX Man page
IsoriX-package Man page
isoscape Man page
Isoscape Man page
isosim Man page
Isosim Man page
oceanmask Man page
plot Man page
plot.calibfit Man page
plot.isofit Man page
plot.isorix Man page
plot.isoscape Man page
print.calibfit Man page
print.isofit Man page
print.isorix Man page
print.isoscape Man page
queryGNIP Man page
QueryGNIP Man page
relevate Man page
RElevate Man page
summary.calibfit Man page
summary.isofit Man page
summary.isorix Man page
summary.isoscape Man page

Files

inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/Saveplot.pdf.asis
inst/doc/exportGIS.pdf.asis
inst/doc/Workflow.pdf
inst/doc/sources_for_exportGIS.Rmd
inst/doc/Saveplot.pdf
inst/doc/sources_for_Workflow.Rmd
inst/doc/exportGIS.pdf
inst/doc/sources_for_Saveplot.Rmd
inst/doc/Workflow.pdf.asis
NAMESPACE
data
data/isopalette2.rda
data/isopalette1.rda
data/GNIPdata.rda
data/oceanmask.rda
data/calibdata.rda
data/assigndata.rda
data/elevraster.rda
data/datalist
data/countries.rda
data/Europefit.rda
R
R/IsoriX-internal.R R/plot.methods.R R/queryGNIP.R R/relevate.R R/plot.isofit.R R/isoscape.R R/plot.calibfit.R R/isosim.R R/calibfit.R R/getelev.R R/isofit.R R/isorix.R
vignettes
vignettes/Saveplot.pdf.asis
vignettes/exportGIS.pdf.asis
vignettes/Workflow.pdf.asis
MD5
build
build/vignette.rds
DESCRIPTION
man
man/oceanmask.Rd man/isoscape.Rd man/isorix.Rd man/Europefit.Rd man/isofit.Rd man/isopalettes.Rd man/plot.methods.Rd man/calibfit.Rd man/queryGNIP.Rd man/assigndata.Rd man/calibdata.Rd man/worldcountries.Rd man/IsoriX-defunct.Rd man/relevate.Rd man/elevraster.Rd man/IsoriX-package.Rd man/getelev.Rd man/GNIPdata.Rd man/isosim.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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