IsoriX: Isoscape Computation and Inference of Spatial Origins using Mixed Models

Building isoscapes using mixed models and inferring the geographic origin of organisms based on their isotopic ratios. This package is essentially a simplified interface to several other packages. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps using lattice.

AuthorAlexandre Courtiol [aut, cre], Fran├žois, Rousset [aut], Stephanie Kramer-Schadt [aut]
Date of publication2016-09-11 16:32:52
MaintainerAlexandre Courtiol <alexandre.courtiol@gmail.com>
LicenseGPL (>= 2)
Version0.4-1

View on CRAN

Functions

assignmentdata Man page
Calibfit Man page
calibrationdata Man page
elevationrastersmall Man page
GetElev Man page
GNIP_Europe Man page
GNIP_Model Man page
GNIP_World Man page
Isofit Man page
Isorix Man page
IsoriX Man page
IsoriX-package Man page
isorixpalette Man page
Isoscape Man page
isoscapepalette Man page
Isosim Man page
oceanmask Man page
plot Man page
plot.calibfit Man page
plot.isofit Man page
plot.isorix Man page
plot.isoscape Man page
print Man page
print.calibfit Man page
print.isofit Man page
print.isorix Man page
print.isoscape Man page
QueryGNIP Man page
RElevate Man page
summary Man page
summary.calibfit Man page
summary.isofit Man page
summary.isorix Man page
summary.isoscape Man page
worldcountries Man page

Files

IsoriX
IsoriX/inst
IsoriX/inst/CITATION
IsoriX/inst/NEWS.Rd
IsoriX/inst/doc
IsoriX/inst/doc/Saveplot.pdf.asis
IsoriX/inst/doc/Workflow.pdf
IsoriX/inst/doc/Saveplot.pdf
IsoriX/inst/doc/sources_for_Workflow.Rmd
IsoriX/inst/doc/sources_for_Saveplot.Rmd
IsoriX/inst/doc/Workflow.pdf.asis
IsoriX/NAMESPACE
IsoriX/data
IsoriX/data/calibrationdata.rda
IsoriX/data/worldcountries.rda
IsoriX/data/isorixpalette.rda
IsoriX/data/GNIP_Model.rda
IsoriX/data/oceanmask.rda
IsoriX/data/GNIP_World.rda
IsoriX/data/GNIP_Europe.rda
IsoriX/data/isoscapepalette.rda
IsoriX/data/datalist
IsoriX/data/assignmentdata.rda
IsoriX/data/elevationrastersmall.rda
IsoriX/R
IsoriX/R/GetElev.R IsoriX/R/plot.isoscape.R IsoriX/R/IsoriX-internal.R IsoriX/R/print.methods.R IsoriX/R/Calibfit.R IsoriX/R/plot.isofit.R IsoriX/R/plot.calibfit.R IsoriX/R/RElevate.R IsoriX/R/Isorix.R IsoriX/R/Isosim.R IsoriX/R/Isofit.R IsoriX/R/Isoscape.R IsoriX/R/plot.isorix.R IsoriX/R/QueryGNIP.R
IsoriX/vignettes
IsoriX/vignettes/Saveplot.pdf.asis
IsoriX/vignettes/Workflow.pdf.asis
IsoriX/MD5
IsoriX/build
IsoriX/build/vignette.rds
IsoriX/DESCRIPTION
IsoriX/man
IsoriX/man/QueryGNIP.Rd IsoriX/man/oceanmask.Rd IsoriX/man/GNIP_Europe.Rd IsoriX/man/GNIP_World.Rd IsoriX/man/print.methods.Rd IsoriX/man/elevationrastersmall.Rd IsoriX/man/plot.methods.Rd IsoriX/man/Isofit.Rd IsoriX/man/Calibfit.Rd IsoriX/man/calibrationdata.Rd IsoriX/man/worldcountries.Rd IsoriX/man/RElevate.Rd IsoriX/man/Isorix.Rd IsoriX/man/GetElev.Rd IsoriX/man/IsoriX-package.Rd IsoriX/man/isorixpalette.Rd IsoriX/man/GNIP_Model.Rd IsoriX/man/Isoscape.Rd IsoriX/man/Isosim.Rd IsoriX/man/assignmentdata.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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