IsoriX: Isoscape Computation and Inference of Spatial Origins using Mixed Models

Building isoscapes using mixed models and inferring the geographic origin of organisms based on their isotopic ratios. This package is essentially a simplified interface to several other packages. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps using lattice.

AuthorAlexandre Courtiol [aut, cre], Fran├žois, Rousset [aut], Stephanie Kramer-Schadt [aut]
Date of publication2016-09-11 16:32:52
MaintainerAlexandre Courtiol <alexandre.courtiol@gmail.com>
LicenseGPL (>= 2)
Version0.4-1

View on CRAN

Files in this package

IsoriX
IsoriX/inst
IsoriX/inst/CITATION
IsoriX/inst/NEWS.Rd
IsoriX/inst/doc
IsoriX/inst/doc/Saveplot.pdf.asis
IsoriX/inst/doc/Workflow.pdf
IsoriX/inst/doc/Saveplot.pdf
IsoriX/inst/doc/sources_for_Workflow.Rmd
IsoriX/inst/doc/sources_for_Saveplot.Rmd
IsoriX/inst/doc/Workflow.pdf.asis
IsoriX/NAMESPACE
IsoriX/data
IsoriX/data/calibrationdata.rda
IsoriX/data/worldcountries.rda
IsoriX/data/isorixpalette.rda
IsoriX/data/GNIP_Model.rda
IsoriX/data/oceanmask.rda
IsoriX/data/GNIP_World.rda
IsoriX/data/GNIP_Europe.rda
IsoriX/data/isoscapepalette.rda
IsoriX/data/datalist
IsoriX/data/assignmentdata.rda
IsoriX/data/elevationrastersmall.rda
IsoriX/R
IsoriX/R/GetElev.R IsoriX/R/plot.isoscape.R IsoriX/R/IsoriX-internal.R IsoriX/R/print.methods.R IsoriX/R/Calibfit.R IsoriX/R/plot.isofit.R IsoriX/R/plot.calibfit.R IsoriX/R/RElevate.R IsoriX/R/Isorix.R IsoriX/R/Isosim.R IsoriX/R/Isofit.R IsoriX/R/Isoscape.R IsoriX/R/plot.isorix.R IsoriX/R/QueryGNIP.R
IsoriX/vignettes
IsoriX/vignettes/Saveplot.pdf.asis
IsoriX/vignettes/Workflow.pdf.asis
IsoriX/MD5
IsoriX/build
IsoriX/build/vignette.rds
IsoriX/DESCRIPTION
IsoriX/man
IsoriX/man/QueryGNIP.Rd IsoriX/man/oceanmask.Rd IsoriX/man/GNIP_Europe.Rd IsoriX/man/GNIP_World.Rd IsoriX/man/print.methods.Rd IsoriX/man/elevationrastersmall.Rd IsoriX/man/plot.methods.Rd IsoriX/man/Isofit.Rd IsoriX/man/Calibfit.Rd IsoriX/man/calibrationdata.Rd IsoriX/man/worldcountries.Rd IsoriX/man/RElevate.Rd IsoriX/man/Isorix.Rd IsoriX/man/GetElev.Rd IsoriX/man/IsoriX-package.Rd IsoriX/man/isorixpalette.Rd IsoriX/man/GNIP_Model.Rd IsoriX/man/Isoscape.Rd IsoriX/man/Isosim.Rd IsoriX/man/assignmentdata.Rd

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