JAGUAR: Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)
Version 3.0.1

Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.

AuthorChaitanya R. Acharya and Andrew S. Allen
Date of publication2016-07-27 02:52:37
MaintainerChaitanya Acharya <c.acharya@duke.edu>
LicenseGPL-2
Version3.0.1
URL https://groups.google.com/d/forum/jaguar-r-package
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("JAGUAR")

Getting started

Package overview
README.md

Popular man pages

cis_eqtl: An internal C++ function
jag_fun: An internal C++ function
jaguar_gwa: Perform genome-wide analysis
JAGUAR-package: Joint analysis of genotype and group-specific variability...
jaguar_process: Obtain significant gene-SNP pairs based on a predetermined...
jaguar_slice: Slice gene expression data into multiple partitions
rowsumscpp: An internal C++ function
See all...

All man pages Function index File listing

Man pages

cis_eqtl: An internal C++ function
GENEapply: An internal C++ function
jag_fun: An internal C++ function
jagSIM: An internal C++ function
jaguar_cis: Perform cis-eQTL analysis
jaguar_example: Simulated multi-tissue eQTL data
jaguar_gwa: Perform genome-wide analysis
JAGUAR-package: Joint analysis of genotype and group-specific variability...
jaguar_plotqtl: Plotting the eQTL results
jaguar_process: Obtain significant gene-SNP pairs based on a predetermined...
jaguar_sim: Run null or power simulations
jaguar_slice: Slice gene expression data into multiple partitions
rowsumscpp: An internal C++ function
vcSIM: An internal C++ function

Functions

Files

src
src/jaguar.cpp
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
data
data/jaguar_example.rda
R
R/JAGUAR.R
R/RcppExports.R
README.md
MD5
DESCRIPTION
man
man/rowsumscpp.Rd
man/jag_fun.Rd
man/jagSIM.Rd
man/jaguar_slice.Rd
man/cis_eqtl.Rd
man/JAGUAR-package.Rd
man/jaguar_example.Rd
man/jaguar_sim.Rd
man/GENEapply.Rd
man/jaguar_process.Rd
man/jaguar_gwa.Rd
man/jaguar_plotqtl.Rd
man/vcSIM.Rd
man/jaguar_cis.Rd
JAGUAR documentation built on May 20, 2017, 4:23 a.m.

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