jaguar_example: Simulated multi-tissue eQTL data

In JAGUAR: Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)

Description

This is a list object containing a simulated eQTL data

Format

List containing gene expression data as a matrix with genes on rows and samples in columns, genotype data in allele dosage format with SNPs on rows and samples in columns, gene and SNP information in BED format.

Value

GENE_EXP	A matrix of gene expression data with 100 genes and 100 individuals in five groups (so a total of 500 samples)
GENO_MAT	A matrix of genotype data with 1,036 SNPs in 100 individuals with SNPs in allele dosage format i.e. 0, 1 or 2
GENE_BED	Gene location information in BED file format
SNP_BED	SNP location information in SNP file format

JAGUAR documentation built on May 2, 2019, 3:26 p.m.