Files in JointAI

Joint Analysis and Imputation of Incomplete Data

NEWS.md README.md R/helpfunctions_divide_matrices.R R/get_model_info.R R/splines.R R/crosscorr.R R/JAGSmodel_surv.R R/add_samples.R R/methods.R R/datasets.R R/get_refs.R R/helpfunctions.R R/get_MIdat.R R/summary.JointAI.R R/get_subset.R R/helpfunctions_info_list.R R/list_models.R R/helpfunctions_checks.R R/parameters.R R/get_params.R R/JointAI.R R/predict.R R/deprecated.R R/JAGSmodel_glm.R R/JAGSmodel_clm.R R/convergence_criteria.R R/JAGSmodel_glmm.R R/JointAIObject.R R/scaling.R R/md_pattern.R R/helpfunctions_JAGS.R R/get_modeltypes.R R/get_data_list.R R/build_model.R R/get_model_dimensions.R R/JAGSmodel_clmm.R R/plots.R R/residuals.R R/helpfunctions_model_imp.R R/divide_matrices.R R/helpfunctions_JAGSmodel.R R/helpfunctions_prediction.R R/helpfunctions_survival.R R/extract_state.R R/helpfunctions_ranefs.R R/helpfunctions_formulas_general.R R/JAGSmodel_mlogitmm.R R/JAGSmodel_mlogit.R R/helpfunctions_summary.R R/helpfunctions_tests.R R/helpfunctions_vcov.R R/helpfunctions_formulas.R R/plot_imp_distr.R R/model_imp.R R/helpfunctions_print-paste.R R/helpfunctions_melt.R inst/doc/ModelSpecification.Rmd inst/doc/SelectingParameters.Rmd inst/doc/AfterFitting.Rmd inst/doc/MCMCsettings.Rmd inst/doc/MCMCsettings.R tests/testthat.R tests/testthat/test-helpfunctions_checks.R tests/testthat/test-auxvars.R tests/testthat/test-groupings.R tests/testthat/test-helpfunctions.R tests/testthat/test-survreg.R tests/testthat/test-clm.R tests/testthat/test-helpfunctions2.R tests/testthat/test-glmm.R tests/testthat/test-glm.R tests/testthat/test-plots.R tests/testthat/test-helpfunctions_melt.R tests/testthat/test-add_samples.R tests/testthat/test-clmm.R tests/testthat/test-modeltypes.R tests/testthat/test-helpfunctions_ranefs.R tests/testthat/test-survival.R tests/testthat/test-mlogit.R tests/testthat/test-printfcts.R tests/testthat/test-helpfunctions_vcov.R tests/testthat/test-helpfunctions_formulas_general.R tests/testthat/test-helpfunctions_survival.R tests/testthat/test-helpfunctions_formulas.R tests/testthat/test-mlogitmm.R tests/testthat/test-coxph.R tests/testthat/test-get_models.R tests/testthat/_snaps/glm.md tests/testthat/_snaps/clmm.md tests/testthat/_snaps/printfcts.md tests/testthat/_snaps/glmm.md tests/testthat/_snaps/mlogitmm.md tests/testthat/_snaps/clm.md tests/testthat/_snaps/mlogit.md tests/testthat/_snaps/coxph.md tests/testthat/_snaps/survreg.md vignettes/ModelSpecification.Rmd vignettes/SelectingParameters.Rmd vignettes/AfterFitting.Rmd vignettes/MCMCsettings.Rmd vignettes/precompile.R man/paste_coef.Rd man/JointAIObject.Rd man/check_rd_vcov.Rd man/add_samples.Rd man/sum_duration.Rd man/choose_default_model.Rd man/model_imp.Rd man/plot_imp_distr.Rd man/extract_state.Rd man/get_family.Rd man/get_MIdat.Rd man/varname_to_modelframe.Rd man/wideDF.Rd man/residuals.JointAI.Rd man/extract_fixef_formula.Rd man/remove_grouping.Rd man/two_value_to_factor.Rd man/extract_lhs_string.Rd man/factor_to_integer.Rd man/drop_levels.Rd man/paste_scaling.Rd man/combine_formulas.Rd man/remove_lhs.Rd man/difftime_df.Rd man/check_fixed_random.Rd man/MC_error.Rd man/rd_vcov.Rd man/plot.JointAI.Rd man/check_formula_list.Rd man/get_Mlist.Rd man/plot_all.Rd man/JointAI.Rd man/check_duplicate_groupings.Rd man/all_vars.Rd man/check_rd_vcov_list.Rd man/PBC.Rd man/check_groups_vary_within_lvl.Rd man/summary.JointAI.Rd man/reformat_difftime.Rd man/split_formula_list.Rd man/sharedParams.Rd man/check_data.Rd man/compare_data_structure.Rd man/expand_rd_vcov_full.Rd man/cross_corr.Rd man/predDF.Rd man/rd_terms_by_grouping.Rd man/bs.Rd man/ns.Rd man/get_nranef.Rd man/longDF.Rd man/replace_nan_with_na.Rd man/remove_formula_grouping.Rd man/check_full_blockdiag.Rd man/clean_names.Rd man/extract_grouping.Rd man/normalize_formula_args.Rd man/paste_scale.Rd man/NHANES.Rd man/merge_call_args.Rd man/resolve_family_obj.Rd man/hc_rdslope_interact.Rd man/traceplot.Rd man/get_resp_mat.Rd man/duration_obj.Rd man/combine_formula_lists.Rd man/list_models.Rd man/default_hyperpars.Rd man/get_missinfo.Rd man/extract_ranef_formula.Rd man/check_redundant_lvls.Rd man/internal_clean_survname.Rd man/GR_crit.Rd man/set_refcat.Rd man/auto_corr.Rd man/get_datlvls.Rd man/get_grouping_levels.Rd man/clean_survname.Rd man/prep_arglist.Rd man/get_modeltype.Rd man/check_na_groupings.Rd man/simLong.Rd man/get_listelement.Rd man/paste_linpred.Rd man/densplot.Rd man/check_vars_in_data.Rd man/Surv.Rd man/predict.JointAI.Rd man/check_classes.Rd man/md_pattern.Rd man/parameters.Rd man/hc_rdslope_info.Rd man/paste_analysis_type.Rd man/paste_data.Rd man/add_linebreaks.Rd man/convert_variables.Rd man/get_groups.Rd man/extract_lhs_varnames.Rd