LANDD: Liquid Association for Network Dynamics Detection
Version 1.1.0

Using Liquid Association for Network Dynamics Detection.

Browse man pages Browse package API and functions Browse package files

AuthorShangzhao Qiu, Yan Yan, Tianwei Yu
Date of publication2016-10-01 01:14:24
MaintainerShangzhao Qiu <qsz1328@gmail.com>
LicenseGPL (>= 2)
Version1.1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("LANDD")

Man pages

getgobp: Create a table to record Gene Ontology Biological Process...
get.W: Record genes W
graph.kd: Find weights based on kernel density on the graph. There are...
lascouting: Find the liquid association scouting genes.
normalizeInputMatrix: Normalize the input Matrix
simulateLANDD: Simulate LANDD
visualize: Visualize: Generate a graph which vividly displays the gene...
visualize.community: visualize ego gene X, its k step neighbours, and the W gene...
xw.distance: Create a table to record the distance between gene x and gene...

Functions

cleanGraph Source code
cleanMatrix Source code
createnet Source code
cutoffz Source code
get.W Man page Source code
get.W.GO Source code
getCommonNode Source code
getCommunity Source code
getGO Source code
getSubNet Source code
getgobp Man page Source code
graph.kd Man page Source code
la.simu Source code
la.simu.given.xy Source code
lascore Source code
lascouting Man page Source code
normalizeInput Source code
normalizeInputMatrix Man page Source code
simulateLANDD Man page Source code
simulateLANDD3 Source code
stl_sort Source code
visualize Man page Source code
visualize.community Man page Source code
w.distance Source code
xw.distance Man page Source code

Files

src
src/normalize.cpp
src/RcppExports.cpp
NAMESPACE
R
R/lascouting.R
R/getgobp.R
R/simulation.R
R/kernel.density.R
R/RcppExports.R
R/util.R
R/visualize.R
MD5
DESCRIPTION
man
man/xw.distance.Rd
man/simulateLANDD.Rd
man/lascouting.Rd
man/graph.kd.Rd
man/get.W.Rd
man/visualize.community.Rd
man/visualize.Rd
man/normalizeInputMatrix.Rd
man/getgobp.Rd
LANDD documentation built on May 19, 2017, 8:10 a.m.