LANDD: Liquid Association for Network Dynamics Detection

Share:

Using Liquid Association for Network Dynamics Detection.

Author
Shangzhao Qiu, Yan Yan, Tianwei Yu
Date of publication
2016-10-01 01:14:24
Maintainer
Shangzhao Qiu <qsz1328@gmail.com>
License
GPL (>= 2)
Version
1.1.0

View on CRAN

Man pages

getgobp
Create a table to record Gene Ontology Biological Process...
get.W
Record genes W
graph.kd
Find weights based on kernel density on the graph. There are...
lascouting
Find the liquid association scouting genes.
normalizeInputMatrix
Normalize the input Matrix
simulateLANDD
Simulate LANDD
visualize
Visualize: Generate a graph which vividly displays the gene...
visualize.community
visualize ego gene X, its k step neighbours, and the W gene...
xw.distance
Create a table to record the distance between gene x and gene...

Files in this package

LANDD
LANDD/src
LANDD/src/normalize.cpp
LANDD/src/RcppExports.cpp
LANDD/NAMESPACE
LANDD/R
LANDD/R/lascouting.R
LANDD/R/getgobp.R
LANDD/R/simulation.R
LANDD/R/kernel.density.R
LANDD/R/RcppExports.R
LANDD/R/util.R
LANDD/R/visualize.R
LANDD/MD5
LANDD/DESCRIPTION
LANDD/man
LANDD/man/xw.distance.Rd
LANDD/man/simulateLANDD.Rd
LANDD/man/lascouting.Rd
LANDD/man/graph.kd.Rd
LANDD/man/get.W.Rd
LANDD/man/visualize.community.Rd
LANDD/man/visualize.Rd
LANDD/man/normalizeInputMatrix.Rd
LANDD/man/getgobp.Rd