get.W: Record genes W

Description Usage Arguments Details Value Examples

View source: R/getgobp.R

Description

get.W() creates a table to record Gene Ontology Biological Process mapping results. Every gene x takes a row.

Usage

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get.W(graph, laresult, z.matrix, cutoff, k = 2)

Arguments

graph

The graph of gene network.

laresult

The result of lascouting which finds the liquid association scouting genes.

z.matrix

A matrix representing gene Z (selected scouting genes). Row names are the gene id in gene network.

cutoff

The threshold to find LA scouting genes.

k

An Integer giving the order of the network.

Details

get.W() generates a result file of ego gene X, genes within k steps of X, the liquid association scouting genes of x and genes W.Every gene x takes a row in the table.

Value

A table records the intermediate result of Gene Ontology Biological Process which contains ego gene X, genes within k steps of X, the liquid association scouting genes of x and genes W.Each x occupies a row.

Examples

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## Not run:  
laresult <- lascouting(g,m,k=2,n.cores=4)  
get.W(g,laresult,z,cutoff=0.8,k=2)
## End(Not run)

LANDD documentation built on May 1, 2019, 8:12 p.m.