Files in LUCIDus

LUCID with Multiple Omics Data

R/summary.R R/early_estep.R R/stability_utils.R R/data.R R/EM_all.R R/lucid.R R/missing.R R/early_mstep.R R/tune_lucid.R R/summary_auxi_fxn_serial.R R/utility.R R/g_computation_utility.R R/parallel_mstep.R R/pred_lucid.R R/em.R R/00_stability_preload.R R/plot_lucid.R R/missing_utils.R R/boot_lucid.R R/predict_lucid_all.R R/parallel_estep.R R/utils.R inst/tutorials/serial_6stage_parallel_monotone_missing_tutorial.Rmd tests/testthat.R tests/testthat/test-predict_normal_1_layer.R tests/testthat/test-tune-Serial-binary.R tests/testthat/test-summary-missing-profile.R tests/testthat/test-serial-6stage-parallel-smoke.R tests/testthat/test-boot-lucid-serial.R tests/testthat/test-predict-serial-binary-5-layers.R tests/testthat/test-gcomp-early-parallel-contract.R tests/testthat/test-Serial-binary-missing.R tests/testthat/test-parallel-tuning-penalty-grid.R tests/testthat/test-summart-binary-5-layers.R tests/testthat/test-gcomp-binary-1-layer.R tests/testthat/test-Serial-binary-summary.R tests/testthat/test-predict-binary-5-layers.R tests/testthat/test-tune-normal-2-layers.R tests/testthat/test-rho-g-exposure-only-consistency.R tests/testthat/test-summary-normal-5-layers.R tests/testthat/test-boot-lucid-early.R tests/testthat/test-em-restart-guard.R tests/testthat/test-missing-normal-1-layers.R tests/testthat/test-predict-normal-5-layers.R tests/testthat/test-lucid-normal-3-layers.R tests/testthat/test-predict-binary-1-layer.R tests/testthat/test-serial-fit-missing-robustness.R tests/testthat/test-predict-binary-3-layers.R tests/testthat/test-parallel-p0-regressions.R tests/testthat/test-tune-binary-2-layers.R tests/testthat/test-serial-summary-context-labels.R tests/testthat/test-parallel-selection-impute.R tests/testthat/test-predict-serial-normal-5-layers.R tests/testthat/test-lucid-binary-5-layers.R tests/testthat/test-lucid-normal-1-layer.R tests/testthat/test-missing-binary-5-layers.R tests/testthat/test-g_comp-binary-3-layers.R tests/testthat/test-verbose-fit-logging.R tests/testthat/test-parallel-p1-plumbing.R tests/testthat/test-missing-binary-1-layer.R tests/testthat/test-early-robustness.R tests/testthat/test-gcomp-serial-normal-5-layers.R tests/testthat/test-Serial-normal-missing.R tests/testthat/test-boot-lucid-parallel.R tests/testthat/test-plot_lucid_1_layer.R tests/testthat/test-missing-normal-3-layers.R tests/testthat/test-lucid-binary-3-layers.R tests/testthat/test-tune-penalty-fail-guard.R tests/testthat/test-parallel-robustness-extra.R tests/testthat/test-lucid-normal-5-layers.R tests/testthat/test-lucid-binary-1-layer.R tests/testthat/test-extreme-edge-cases.R tests/testthat/test-workhorse-p0-p1-regressions.R tests/testthat/test-tune-Serial-normal.R man/safe_log_sum_exp.Rd man/summarize_missing_stats.Rd man/summary.lucid_parallel.Rd man/analyze_missing_pattern.Rd man/gen_ci.Rd man/boot_lucid.Rd man/safe_impute.Rd man/summary_lucid.Rd man/predict_lucid.Rd man/print.sumlucid_early.Rd man/fill_data.Rd man/print.sumlucid_parallel.Rd man/Istep_Z.Rd man/check_convergence.Rd man/simulated_HELIX_data.Rd man/estimate_lucid.Rd man/check_na.Rd man/safe_solve.Rd man/check_imputation_quality.Rd man/plot.Rd man/print.sumlucid_serial.Rd man/safe_normalize.Rd man/sim_data.Rd man/check_and_stabilize_sigma.Rd man/lucid.Rd man/summary.lucid_serial.Rd man/tune_lucid.Rd