DiseaseInfList: All Known Disease Information.

In LncPriCNet: Prioritizing Candidate LncRNAs Based on a Composite Multi-Level Network

Description

A dataframe contains known disease information, including disease phenotype, disease genes and disease lncRNAs.

Usage

data("DiseaseInfList")

Format

A data frame with 53 observations on the following 6 variables.

OMIMId

a numeric vector

DLncs

known disease lncRNAs

DGenes

known disease genes

DGenNum

a numeric vector

DLncNum

a numeric vector

OMIMName

disease phenotype name

Examples

data(DiseaseInfList)
head(DiseaseInfList)
## maybe str(DiseaseInfList) ; 

Example output

  OMIMId
1 109800
2 114480
3 114500
4 114550
5 133239
6 137800
                                                                                  DLncs
1                                                 H19;MALAT1;MEG3;SNHG16;TUG1;UCA1;XIST
2                  BCYRN1;CDKN2B-AS1;GAS5;H19;HOTAIR;MIR31HG;MALAT1;MEG3;PVT1;UCA1;XIST
3                                        CCAT1;CRNDE;H19;HOTAIR;HULC;MALAT1;MEG3;SNHG16
4 BOK-AS1;CDKN2B-AS1;GAS5;H19;HOTAIR;HOTTIP;HULC;IGF2-AS;MALAT1;MEG3;MIAT;MIR7-3HG;XIST
5                                                CBR3-AS1;CDKN2B-AS1;H19;HOTAIR;SOX2-OT
6                                                ADAMTS9-AS2;CCDC26;CDKN2B-AS1;H19;MEG3
                                                                                DGenes
1                                                                       HRAS;FGFR3;RB1
2                    BRCA2;PALB2;NBN;PIK3CA;RAD51;AKT1;CHEK2;XRCC3;BRCA1;BRIP1;FAM175A
3 SMAD4;WRN;MLH3;PIK3CA;EPHA3;ALOX12;BRAF;AKT1;RET;SMAD3;GNAS;AXIN2;CTNNB1;NF1;RUNX1T1
4                                                     MET;AXIN1;MTUS1;PIK3CA;CDKN3;APC
5                                                        LZTS1;ALOX12;WWOX;TP53;TGFBR2
6                                                          ERBB2;PTEN;PPARG;IDH1;DMBT1
  DGenNum DLncNum                 OMIMName
1       3       7           BLADDER CANCER
2      11      11            BREAST CANCER
3      15       8        COLORECTAL CANCER
4       6      13 HEPATOCELLULAR CARCINOMA
5       5       5        ESOPHAGEAL CANCER
6       5       5  GLIOMA SUSCEPTIBILITY 1

LncPriCNet documentation built on May 29, 2017, 3:46 p.m.