Description Usage Arguments Value Author(s) See Also Examples
View source: R/getCoExpGeneofLncs.R
Get co-expressed genes of one or some lncRNAs based on the multi-omics network.
1 | getCoExpGeneofLncs(lncRNAs, GLNet, scoreCutoff = 0.6)
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lncRNAs |
A character or a character vector. The names of lncRNAs. |
GLNet |
An adjacency matrix of the gene-lncRNA network with colnames representing lncRNAs and rownames representing genes. The value represents co-expression relation and it ranges from 0 to 1. |
scoreCutoff |
A numeric donotes if the co-expression scores between genes and lncRNAs above this value, the genes would be retained. A value ranges from 0 to 1. The default value is 0.6. |
A vector of gene names.
Qianlan Yao <yaoqianlan@yahoo.com>
1 2 3 4 5 6 7 8 9 10 11 | ## Not run:
############# getCoExpGeneofLncs ################
##breast cancer
data("GLNetExample")
diseaseInf<-getDiseaseInf("114480")
lncRNA<-diseaseInf$LncRNAs[1]
genes<-getCoExpGeneofLncs(lncRNA, GLNet=GLNetExample, scoreCutoff = 0.6)
print(genes[1:5])
## End(Not run)
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