getCoExpGeneofLncs: Get Co-expressed Genes of LncRNAs

Description Usage Arguments Value Author(s) See Also Examples

View source: R/getCoExpGeneofLncs.R

Description

Get co-expressed genes of one or some lncRNAs based on the multi-omics network.

Usage

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getCoExpGeneofLncs(lncRNAs, GLNet, scoreCutoff = 0.6)

Arguments

lncRNAs

A character or a character vector. The names of lncRNAs.

GLNet

An adjacency matrix of the gene-lncRNA network with colnames representing lncRNAs and rownames representing genes. The value represents co-expression relation and it ranges from 0 to 1.

scoreCutoff

A numeric donotes if the co-expression scores between genes and lncRNAs above this value, the genes would be retained. A value ranges from 0 to 1. The default value is 0.6.

Value

A vector of gene names.

Author(s)

Qianlan Yao <[email protected]>

See Also

getTopDiseaseLncRNAs

Examples

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## Not run: 
#############    getCoExpGeneofLncs   ################
##breast cancer 
data("GLNetExample")
diseaseInf<-getDiseaseInf("114480")
lncRNA<-diseaseInf$LncRNAs[1]
genes<-getCoExpGeneofLncs(lncRNA, GLNet=GLNetExample, scoreCutoff = 0.6) 
print(genes[1:5])


## End(Not run)

LncPriCNet documentation built on May 29, 2017, 3:46 p.m.