Man pages for MACP
Macromolecular Assemblies from Co-Elution Profile (MACP)
| calculate_PPIscore | Calculate Pairwise Protein Profile Similarity using Different... |
| cluster_tuning | ClusterONE Hyperparameters Tuning |
| Clust_Valid | Cluster Evaluation by External Measures |
| data_filtering | Data Filtering |
| EliminateCpxRedundance | Hierarchical Clustering of Modules |
| enrichmentCPX | Functional Enrichment Analysis for Predicted Complexes |
| ensemble_model | Predict Interactions via Ensemble Learning Method |
| exampleData | Demo CF-MS data |
| generate_refInt | Generate Class Labels for Data Input Based on Gold Reference... |
| get_clusters | Predict Complexes |
| getCPX | Fetch Complexes from the CORUM Database |
| get_DenoisedNet | Denoising Predicted Protein-Protein Interactions |
| impute_MissingData | Impute missing Values in Elution Profile Matrix |
| keepMT | Keep Mitochondrial (mt) Proteins |
| MCL_clustering | MCL clustering |
| MCL_tuning | MCL Hyperparameters Tuning |
| orthMappingCpx | Protein Complex Ortholog Mapping |
| predPPI_MACP | Predict Protein-Protein Interactions and Putative Complexes |
| refcpx | CORUM reference complexes |
| scaling | Column and Row-wise Normalization |
| subcellular.mtPPI | Keep Mitochondrial (mt) Proteins |
