orthMappingCpx: Protein Complex Ortholog Mapping

In MACP: Macromolecular Assemblies from Co-Elution Profile (MACP)

Protein Complex Ortholog Mapping

Description

This function uses convert_orthologs function to support ortholog mapping of protein complexes between any pair of 700+ species.

Usage

orthMappingCpx(
  datInput,
  input_species,
  output_species,
  input_taxid,
  output_taxid
)

Arguments

datInput	A list containing reference complexes (i.e., CORUM complexes). Note that the members of each complexes must be represented by UniProt accession identifier.
input_species	Name of the input species (e.g., "mouse","fly"). See map_species to return a full list of available species.
output_species	Name of the output species (e.g., "human"). See map_species to return a full list of available species.
input_taxid	A numeric value that specifies the NCBI taxonomy identifier (TaxId) for input organism (e.g., 10090).
output_taxid	A numeric value that specifies the NCBI taxonomy identifier (TaxId) for output organism.

Details

orthMappingCpx

Value

A list containing complexes, whose members converted to output_species.

Author(s)

Matineh Rahmatbakhsh, [e-mail]

MACP documentation built on March 7, 2023, 7:42 p.m.