IsoSwitch.PlotExpr: Plot gene-splicing relative change
In MARVEL: Revealing Splicing Dynamics at Single-Cell Resolution

View source: R/Script_PLATE_08_DE_5_2_IsoSwitch_PlotExpr.R

IsoSwitch.PlotExpr

R Documentation

Plot gene-splicing relative change

Description

Plots delta PSI vs gene log2-fold change

Usage

IsoSwitch.PlotExpr(MarvelObject, anno = FALSE)

Arguments

`MarvelObject`	Marvel object. S3 object generated from `CompareValues.Genes.10x` function.
`anno`	Logical value. If set to `TRUE`, genes with coordinated, opposing or complex change relative to splicing change will be annotated on the plot. Default value is `FALSE`.

Value

An object of class S3 containing with new slots MarvelObject$DE$Cor$PSIvsExpr$Plot.

Examples

marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))

marvel.demo <- IsoSwitch.PlotExpr(MarvelObject=marvel.demo, anno=TRUE)

# Check output
marvel.demo$DE$Cor$PSIvsExpr$Plot

MARVEL documentation built on Oct. 31, 2022, 5:07 p.m.