View source: R/Script_PLATE_09_PREDICT_NMD_6_PropPTC.R
PropPTC | R Documentation |
Tabulates and plots the proportion of transcripts with PTC for each splicing event type.
PropPTC(MarvelObject, xlabels.size = 8, show.NovelSJ.NoCDS = TRUE, prop.test)
MarvelObject |
Marvel object. S3 object generated from |
xlabels.size |
Numeric value. Size of the x-axis tick labels. Default is 8. |
show.NovelSJ.NoCDS |
Logical value. If set to |
prop.test |
Character string. |
An object of class S3 with new slots MarvelObject$NMD$PTC.Prop$Table
, MarvelObject$NMD$PTC.Prop$Plot
, and MarvelObject$NMD$PTC.Prop$Plot.Stats
.
marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL")) marvel.demo <- PropPTC(MarvelObject=marvel.demo, xlabels.size=8, show.NovelSJ.NoCDS=TRUE, prop.test="fisher" ) # Check outputs head(marvel.demo$NMD$PTC.Prop$Table) marvel.demo$NMD$PTC.Prop$Plot marvel.demo$NMD$PTC.Prop$Plot.Stats
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