MAnorm2: Tools for Normalizing and Comparing ChIP-seq Samples

Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) is the premier technology for profiling genome-wide localization of chromatin-binding proteins, including transcription factors and histones with various modifications. This package provides a robust method for normalizing ChIP-seq signals across individual samples or groups of samples. It also designs a self-contained system of statistical models for calling differential ChIP-seq signals between two or more biological conditions as well as for calling hypervariable ChIP-seq signals across samples. Refer to Tu et al. (2021) <doi:10.1101/gr.262675.120> and Chen et al. (2021) <doi:10.1101/2021.07.27.453915> for associated statistical details.

Package details

AuthorShiqi Tu [aut, cre] (<https://orcid.org/0000-0003-3534-5714>)
MaintainerShiqi Tu <tushiqi@picb.ac.cn>
LicenseGPL-3
Version1.2.0
URL https://github.com/tushiqi/MAnorm2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("MAnorm2")

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MAnorm2 documentation built on Sept. 13, 2021, 5:06 p.m.