API for MAnorm2
Tools for Normalizing and Comparing ChIP-seq Samples

Global functions
.onAttach	Source code
H3K27Ac	Man page
MA.pcc	Man page Source code
MAnorm2	Man page
MAplot	Man page Source code
MAplot.bioCond	Man page Source code
MAplot.default	Man page Source code
MAplot.diffBioCond	Man page Source code
aovBioCond	Man page Source code
bioCond	Man page Source code
checkCountTable	Man page Source code
checkIndex	Man page Source code
cmbBioCond	Man page Source code
diffTest	Man page Source code
diffTest.bioCond	Man page Source code
distBioCond	Man page Source code
estParamHyperChIP	Man page Source code
estimateD0	Man page Source code
estimateD0Robust	Man page Source code
estimatePriorDf	Man page Source code
estimatePriorDfRobust	Man page Source code
estimateSizeFactors	Man page Source code
estimateVarRatio	Man page Source code
extendMeanVarCurve	Man page Source code
fitMeanVarCurve	Man page Source code
intervalMeans	Man page Source code
intervalVars	Man page Source code
inv.trigamma	Man page Source code
isSymPosDef	Man page Source code
meanVarLocalFit	Man page Source code
meanVarParaFit	Man page Source code
mean_var_logwinf	Man page Source code
mvcID.new	Man page Source code
normBioCond	Man page Source code
normBioCondBySizeFactors	Man page Source code
normCoef	Man page Source code
normalize	Man page Source code
normalizeBySizeFactors	Man page Source code
plot.aovBioCond	Man page Source code
plot.matrix	Man page Source code
plot.varTestBioCond	Man page Source code
plotMVC	Man page Source code
plotMeanVarCurve	Man page Source code
print.bioCond	Man page Source code
print.summaryBioCond	Man page Source code
scaleMeanVarCurve	Man page Source code
scaleMeanVarCurveRobust	Man page Source code
setMeanVarCurve	Man page Source code
setPriorDf	Man page Source code
setPriorDfRobust	Man page Source code
setPriorDfVarRatio	Man page Source code
setWeight	Man page Source code
summary.bioCond	Man page Source code
util.trigamma	Man page Source code
varRatio	Man page Source code
varTestBioCond	Man page Source code
vstBioCond	Man page Source code