Files in MAnorm2
Tools for Normalizing and Comparing ChIP-seq Samples
MD5
README.md
NAMESPACE
DESCRIPTION
R/robustMeanVarCurve.R
R/fitMeanVarCurve.R
R/show.R
R/meanVarCurve.R
R/normalize.R
R/bioCond.R
R/diffTest.R
R/util.R
R/VST.R
R/MAnorm2_ops.R
R/MAnorm2.R
inst/NEWS
inst/CITATION
inst/doc/MAnorm2_vignette.Rmd
inst/doc/MAnorm2_vignette.html
inst/doc/MAnorm2_vignette.R
build/vignette.rds
vignettes/MAnorm2_vignette.Rmd
vignettes/library.bib
data/H3K27Ac.rda
man/print.bioCond.Rd
man/aovBioCond.Rd
man/checkIndex.Rd
man/normalize.Rd
man/distBioCond.Rd
man/estimateD0Robust.Rd
man/MA.pcc.Rd
man/MAplot.Rd
man/plotMeanVarCurve.Rd
man/MAplot.diffBioCond.Rd
man/setWeight.Rd
man/mean_var_logwinf.Rd
man/normalizeBySizeFactors.Rd
man/util.trigamma.Rd
man/estimateD0.Rd
man/plot.matrix.Rd
man/bioCond.Rd
man/setMeanVarCurve.Rd
man/plot.varTestBioCond.Rd
man/mvcID.new.Rd
man/plotMVC.Rd
man/scaleMeanVarCurveRobust.Rd
man/setPriorDf.Rd
man/fitMeanVarCurve.Rd
man/estimatePriorDfRobust.Rd
man/normCoef.Rd
man/varTestBioCond.Rd
man/inv.trigamma.Rd
man/vstBioCond.Rd
man/checkCountTable.Rd
man/intervalMeans.Rd
man/summary.bioCond.Rd
man/plot.aovBioCond.Rd
man/H3K27Ac.Rd
man/setPriorDfRobust.Rd
man/normBioCond.Rd
man/print.summaryBioCond.Rd
man/isSymPosDef.Rd
man/extendMeanVarCurve.Rd
man/varRatio.Rd
man/estimateSizeFactors.Rd
man/estimateVarRatio.Rd
man/scaleMeanVarCurve.Rd
man/meanVarParaFit.Rd
man/setPriorDfVarRatio.Rd
man/estimatePriorDf.Rd
man/cmbBioCond.Rd
man/normBioCondBySizeFactors.Rd
man/MAplot.bioCond.Rd
man/intervalVars.Rd
man/estParamHyperChIP.Rd
man/MAnorm2.Rd
man/meanVarLocalFit.Rd
man/diffTest.Rd
