intervalMeans: Deduce the Sample Mean Signal Intensity
In MAnorm2: Tools for Normalizing and Comparing ChIP-seq Samples
intervalMeans R Documentation
Deduce the Sample Mean Signal Intensity
Description
Given a matrix of normalized signal intensities and the inverse of the
corresponding structure matrices, intervalMeans returns the sample
mean signal intensity of each genomic interval.
Usage
intervalMeans(x, inv.strMatrix)
Arguments
x
A matrix of normalized signal intensities, where each row
represents an interval and each column a sample.
inv.strMatrix
A list of inversed structure matrices corresponding
to the intervals. Elements of it are recycled if necessary.
Value
A numeric vector of the sample mean signal intensities.
See Also
bioCond for creating an R object representing a
biological condition, and setWeight for modifying the
structure matrices of such an object.
MAnorm2 documentation built on Oct. 29, 2022, 1:12 a.m.
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| intervalMeans | R Documentation |
Deduce the Sample Mean Signal Intensity
Description
Given a matrix of normalized signal intensities and the inverse of the
corresponding structure matrices, intervalMeans returns the sample
mean signal intensity of each genomic interval.
Usage
intervalMeans(x, inv.strMatrix)
Arguments
x |
A matrix of normalized signal intensities, where each row represents an interval and each column a sample. |
inv.strMatrix |
A list of inversed structure matrices corresponding to the intervals. Elements of it are recycled if necessary. |
Value
A numeric vector of the sample mean signal intensities.
See Also
bioCond for creating an R object representing a
biological condition, and setWeight for modifying the
structure matrices of such an object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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