Man pages for MCMC.qpcr
Bayesian Analysis of qRT-PCR Data
| amp.eff | amplification efficiencies and experimental Cq1 (optional... |
| beckham.data | Cellular heat stress response data. |
| beckham.eff | amplification efficiencies for beckham.data |
| coral.stress | RT-qPCR of stress response in coral Porites astreoides |
| cq2counts | Prepares qRT-PCR data for mcmc.qpcr analysis |
| cq2genorm | Reformats raw Ct data for geNorm analysis (non-parametric... |
| cq2log | Prepares qRT-PCR data for mcmc.qpcr analysis using lognormal... |
| diagnostic.mcmc | Plots three diagnostic plots to check the validity of the... |
| dilutions | Data to determine amplification efficiency |
| getNormalizedData | Extracts qPCR model predictions |
| HPDplot | Plotting fixed effects for all genes for a single combination... |
| HPDplotBygene | Plots qPCR analysis results for individual genes. |
| HPDplotBygeneBygroup | Plots qPCR analysis results for individual genes |
| HPDpoints | HPDplot, HPDpoints |
| HPDsummary | Summarizes and plots results of mcmc.qpcr function series. |
| mcmc.converge.check | MCMC diagnostic plots |
| mcmc.pval | calculates p-value based on Bayesian z-score or MCMC sampling |
| mcmc.qpcr | Analyzes qRT-PCR data using generalized linear mixed model |
| mcmc.qpcr.classic | Analyzes qRT-PCR data using "classic" model, based on... |
| mcmc.qpcr.lognormal | Fits a lognormal linear mixed model to qRT-PCR data. |
| MCMC.qpcr-package | Bayesian analysis of qRT-PCR data |
| normalize.qpcr | Internal function called by mcmc.qpcr.classic |
| outlierSamples | detects outlier samples in qPCR data |
| padj.hpdsummary | Adjusts p-values within an HPDsummary() object for multiple... |
| padj.qpcr | Calculates adjusted p-values corrected for multiple... |
| PrimEff | Determines qPCR amplification efficiencies from dilution... |
| softNorm | Accessory function to mcmc.qpcr() to perform soft... |
| summaryPlot | Wrapper function for ggplot2 to make bar and line graphs of... |
| trellisByGene | For two-way designs, plots mcmc.qpcr model predictions gene... |
