Man pages for MDSMap
High Density Genetic Linkage Mapping using Multidimensional Scaling
| calc.maps.pc | Estimate marker positions using Principal Curves |
| calc.maps.sphere | Estimate marker positions using spherically constrained... |
| calc.nnfit | Calculate the nearest neighbour fit. |
| calc.nnfit.from.file | Nearest neighbour fit from estimated map and file of pairwise... |
| calc.nnfit.loci | Calculates the nearest neighbour fit for an individual... |
| calc.nswaps | Calculates the number of swaps required to move from one... |
| calc.pair.rf.lod | Create recombination matrix from pairwise data file. |
| convert.polar | Convert Cartesian coordinates from wMDS coordinates to polar... |
| dmap | Calculates pairwise map distances from the recombination... |
| dmap.check | Reorders a distance map by a new marker order. |
| estimate.map | Load data, estimate a linkage map and plot diagnostics for... |
| get.dist.loci | Calculates the distance of a marker from some objective... |
| get.nearest.informative | For a given marker finds the nearest neighbours with LOD... |
| invert.map | Invert the order of locimap from an estimated map. |
| lgI.txt | Dataset lgI.txt: pairwise recombination fractions for 143... |
| lgV.txt | Dataset lgV.txt: pairwise recombination fractions for 238... |
| map.to.interval | Map points from MDS final configuration to interval starting... |
| MDSMap-package | High density Genetic Linkage Mapping using Multidimensional... |
| meandist.from.truth | Calculates mean square distance between marker positions in... |
| plot.pcmap | Diagnostic plots for the map estimation using calc.maps.pc... |
| plot.pcmap3d | Diagnostic plots for the map estimation using calc.maps.pc... |
| plot.spheremap | Produces diagnostic plots for the estimated map using... |
| recalc.nnfit.from.map | Calculate a nearest neighbour fit from an estimated map... |
| sim.bc.rflod.file | Simulate a backcross population from homozygous parents. |
