lgV.txt: Dataset lgV.txt: pairwise recombination fractions for 238...

Description Format lgV.txt Source Examples

Description

A dataset containing the pairwise recombinations fractions for 238 SNP markers from linkage group V of potato. These are derived from the genotypes of 190 offspring from a cross between potato cultivar Stirling and the breeding line 12601ab1. Further details are available in Hackett et al. (2013).

Format

An ascii text file in the format described in calc.maps.pc and calc.maps.sphere. The first line contains the number of markers and the number of combinations. Then follow the space-separated combinations with their recombination fractions and LOD scores:

nmarkers
marker_1 marker_2 recombination fraction LOD
1 2 . .
1 3 . .
1 4 . .
. . . .
. . . .
. . . .
2 3 . .
2 4 . .
. . . .

lgV.txt

NA

Source

Hackett, C.A., McLean, K. and Bryan, G.J. (2013). Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population. PLoS ONE 8, e63939

Examples

1
system.file("extdata", "lgV.txt", package="MDSMap")

MDSMap documentation built on Aug. 10, 2018, 1:04 a.m.