Description Usage Arguments Details Value See Also
Calculates a new nearest neighbour fit based on a new order from a map object
generated by calc.maps.pc
, calc.maps.sphere
or
estimate.map
1 | recalc.nnfit.from.map(estmap, mapobject, header = TRUE)
|
estmap |
A character string indicating the name of a comma separated value file with the first column containing marker names in the order of their estimated position. |
mapobject |
A map object generated by |
header |
Logical argument indicating whether the .csv file |
Reads in a new estimated order, reorders the distance map and LOD scores by the new order and recalculates the nearest neighbour fit.
A list with the elements:
fit |
Sum over all markers of the nearest neighbour fits. |
pointfits |
The nearest neighbour fit for each marker. |
meanfit |
Meanv of the nearest neighbour fits over all markers. |
calc.maps.pc
, calc.maps.sphere
, estimate.map
, calc.nnfit
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