get.nearest.informative: For a given marker finds the nearest neighbours with LOD...
In MDSMap: High Density Genetic Linkage Mapping using Multidimensional Scaling
Description
Usage
Arguments
Details
Value
Description
Finds the nearest neighbours of a marker with LOD scores > 0.
Usage
1
get.nearest.informative(loci, lodmap)
Arguments
loci
Scalar indicating a marker number
lodmap
Symmetric matrix of pairwise LOD scores
Details
The columns and rows of the matrix should be in the order corresponding to
the estimated map order. The function then returns the ranks of first markers
to the left and right of the marker of interest with non-zero lod scores.
Value
A vector of length 1 or 2 containing the rank of the nearest informative markers.
MDSMap documentation built on May 1, 2019, 6:51 p.m.
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Description Usage Arguments Details Value
Description
Finds the nearest neighbours of a marker with LOD scores > 0.
Usage
1 | get.nearest.informative(loci, lodmap)
|
Arguments
loci |
Scalar indicating a marker number |
lodmap |
Symmetric matrix of pairwise LOD scores |
Details
The columns and rows of the matrix should be in the order corresponding to the estimated map order. The function then returns the ranks of first markers to the left and right of the marker of interest with non-zero lod scores.
Value
A vector of length 1 or 2 containing the rank of the nearest informative markers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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