create_electrode_dataset: Create Electrode Data Set

In MEAanalysis: Analyse and Visualise Multi Electrode Array Burst Data

Create Electrode Data Set

Description

This function reads in, filters, and reformats electrode burst csv files produced by the axis navigator tool (Axion Biosystems) for use in analysis. This function filters the data to only contain information relating to single electrodes and burst characteristics. It also adds a 'Recording_identifier' column to enable other MEAanalysis functions to calculate burst parameters for a specific recording, as well as a column to identify the well a burst was recorded in.

Usage

create_electrode_dataset(data_path, recording_identifier)

Arguments

data_path	Include path to electrode burst dataset csv or excel file produced by the axis navigator tool. This path should be written within quotation marks and with respect to the current working directory.
recording_identifier	Include a unique identifier for the MEA recording being loaded. This identifier will be added to the 'Recording_identifier' column and be used by other MEAanalysis functions to filter the data and calculate burst parameters.

Value

A reformatted and filtered electrode burst list for use in analysis.

Examples

output_electrode_burst <- create_electrode_dataset(
                                    data_path = system.file("extdata", "input_electrode_burst.csv",
                                                            package = "MEAanalysis"),
                                    recording_identifier = "burst_recording_1")

MEAanalysis documentation built on June 8, 2025, 1:27 p.m.