create_synchrony_dataset: Create Synchrony Data Set

In MEAanalysis: Analyse and Visualise Multi Electrode Array Burst Data

Create Synchrony Data Set

Description

This function reads in, filters, and reformats neural metric csv files produced by the axis navigator neural metric tool (Axion Biosystems) for use in synchrony index analysis.

Usage

create_synchrony_dataset(data_path, heatmap_condition)

Arguments

data_path	Include path to neural metric dataset csv or excel file produced by the axis navigator neural metric tool. This path should be written within quotation marks and with respect to the current working directory.
heatmap_condition	Include a unique identifier for this neuralMetric dataset's experimental condition, this argument will be used by the MEA_heatmap function to group data.

Value

A reformatted and filtered neural metric dataset for use in synchrony index analysis.

Examples

output_neuralMetric <- create_synchrony_dataset(
                                 data_path = system.file("extdata", "input_neuralMetric.csv",
                                                          package = "MEAanalysis"),
                                 heatmap_condition = "SI_condition_1")

MEAanalysis documentation built on June 8, 2025, 1:27 p.m.