base_aquatic_geno: Base Aquatic Function for Genotype Summary
In MGDrivE2: Mosquito Gene Drive Explorer 2

base_aquatic_geno

R Documentation

Base Aquatic Function for Genotype Summary

Description

This function takes a given aquatic (egg, larval, pupal) stage and sums over the Erlang-distributed stages, returning summary trajectories by genotype.

Usage

base_aquatic_geno(out, spn_P, elp)

Arguments

`out`	the output of `sim_trajectory_R`
`spn_P`	the places of the SPN, see details
`elp`	stage to summarize, one of: "egg", "larvae", "pupae"

Details

This function is the base function for summarize_eggs_geno, summarize_larvae_geno, and summarize_pupae_geno.

The places (spn_P) object is generated from one of the following: spn_P_lifecycle_node, spn_P_lifecycle_network, spn_P_epiSIS_node, spn_P_epiSIS_network, spn_P_epiSEIR_node, or spn_P_epiSEIR_network.

The return object depends on the data provided. If the simulation was only 1 node, then no node designation is returned. If only one repetition was performed, no rep designation is returned. Columns always returned include: time, genotype, and value.