spn_P_epi_decoupled_node: Make Places (P) For a Node (SEI Mosquitoes). Note in the v2...

In MGDrivE2: Mosquito Gene Drive Explorer 2

Make Places (P) For a Node (SEI Mosquitoes). Note in the v2 epi module, we only use the SPN framework for the mosquito component of the model. The human compoenent will be handled separately in the sampler, and will be formulated as an ODE. This function makes the set of places (P) for a SPN. It is used alone if our model is a single-node metapopulation for mosquito SEI and dynamics; This is used by both SIS and Imperial transmission models.

Description

The params argument supplies all of the ecological parameters necessary to calculate equilibrium values. This function requires the nE, nL, nP, and nEIP parameters to be specified. For more details, see equilibrium_SEI_SIS

Usage

spn_P_epi_decoupled_node(params, cube)

Arguments

params	a named list of parameters (see details)
cube	an inheritance cube from the MGDrivE package (e.g. cubeMendelian)

Details

For examples of using this function, see: vignette("epi-node", package = "MGDrivE2")

Value

a list with two elements: ix contains labeled indices of the places by life stage, u is the character vector of places (P)

MGDrivE2 documentation built on Sept. 14, 2025, 5:09 p.m.