sim_trajectory_base_CSV_decoupled: Simulate Trajectory From one SPN Model

In MGDrivE2: Mosquito Gene Drive Explorer 2

Simulate Trajectory From one SPN Model

Description

This is an internal function to sim_trajectory_CSV. It does the actual sampling once all of the functions have been checked and setup.

Usage

sim_trajectory_base_CSV_decoupled(
  x0,
  h0,
  SPN_P,
  theta,
  times,
  stepFun,
  events0 = NULL,
  batch = NULL,
  Sout = NULL,
  verbose = TRUE,
  human_ode = "Imperial",
  cube = NULL,
  folders = folders
)

Arguments

x0	the initial marking of the SPN (initial state)
h0	initial human state distribution
SPN_P	stochastic petri net, places
theta	parameters
times	sequence of sampling times
stepFun	a sampling function
events0	a data.frame of events (uses the same format as required in package deSolve for consistency, see events for more information)
batch	a list of batch migration events, created from batch_migration, may be set to NULL if not used
Sout	an optional matrix to track event firings
verbose	print a progress bar?
human_ode	ode function used for human states
cube	inheritance cube
folders	vector of folders to write output

Value

no return, prints .csv files into provided folders

MGDrivE2 documentation built on March 7, 2023, 6:44 p.m.