GetHpltStats: GetHpltStats() function

In MHCtools: Analysis of MHC Data in Non-Model Species

GetHpltStats() function

Description

GetHpltStats uses the output files produced by the HpltFind() function to calculate the mean of the mean proportion of incongruent sequences across all nests in the data set.

Usage

GetHpltStats(filepath)

Arguments

filepath

is a user defined path to the folder where the output files from the HpltFind() function have been saved.

Details

If you publish data or results produced with MHCtools, please cite both of the following references: Roved, J. 2022. MHCtools: Analysis of MHC data in non-model species. Cran. Roved, J., Hansson, B., Stervander, M., Hasselquist, D., & Westerdahl, H. 2022. MHCtools - an R package for MHC high-throughput sequencing data: genotyping, haplotype and supertype inference, and downstream genetic analyses in non-model organisms. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13645

Value

A mean of the mean proportion of incongruent sequences for each nest.

See Also

HpltFind; GetHpltTable

Examples

filepath <- system.file("extdata/HpltFindOut/", package="MHCtools")
GetHpltStats(filepath)

MHCtools documentation built on July 9, 2023, 5:13 p.m.