GetReplTable: GetReplTable function

In MHCtools: Analysis of MHC Data in Non-Model Species

GetReplTable function

Description

GetReplTable uses the output files produced by the ReplMatch() function to produce a table with the replicate sets and their respective mean proportion of incongruent sequences.

Usage

GetReplTable(filepath)

Arguments

filepath

is a user defined path to the folder where the output files from the ReplMatch() function have been saved.

Details

If you publish data or results produced with MHCtools, please cite both of the following references: Roved, J. 2022. MHCtools: Analysis of MHC data in non-model species. Cran. Roved, J., Hansson, B., Stervander, M., Hasselquist, D., & Westerdahl, H. 2022. MHCtools - an R package for MHC high-throughput sequencing data: genotyping, haplotype and supertype inference, and downstream genetic analyses in non-model organisms. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13645

Value

A table with the mean proportion of incongruent sequences for each replicate set.

See Also

ReplMatch; GetReplStats

Examples

filepath <- system.file("extdata/ReplMatchOut/", package="MHCtools")
GetReplTable(filepath)

MHCtools documentation built on July 9, 2023, 5:13 p.m.