GetHpltTable: GetHpltTable() function

In MHCtools: Analysis of MHC Data in Non-Model Species

GetHpltTable() function

Description

GetHpltTable uses the output files produced by the HpltFind() function to produce a table with the mean proportion of incongruent sequences for each nest. If the mean proportion of incongruent sequences is generally low, but certain nests have many incongruent sequences, biological reasons may be causing the mismatches, e.g. extra-pair fertilizations or recombination events.

Usage

GetHpltTable(filepath)

Arguments

filepath

is a user defined path to the folder where the output files from the HpltFind() function have been saved.

Details

If you publish data or results produced with MHCtools, please cite both of the following references: Roved, J. (2022). MHCtools: Analysis of MHC data in non-model species. Cran. Roved, J. (2024). MHCtools 1.5: Analysis of MHC sequencing data in R. In S. Boegel (Ed.), HLA Typing: Methods and Protocols (2nd ed., pp. 275–295). Humana Press. https://doi.org/10.1007/978-1-0716-3874-3_18

Value

A table with the mean proportion of incongruent sequences for each nest.

See Also

HpltFind; GetHpltStats

Examples

filepath <- system.file("extdata/HpltFindOut/", package="MHCtools")
GetHpltTable(filepath)

MHCtools documentation built on April 3, 2025, 7:17 p.m.