API for MIC
Analysis of Antimicrobial Minimum Inhibitory Concentration Data
| Global functions | |
|---|---|
| MIC | Man page |
| MIC-package | Man page |
| as.sir_vectorised | Man page Source code |
| as_patric_db | Source code |
| bias | Man page Source code |
| check_valid_patric_db | Source code |
| clean_raw_mic | Man page Source code |
| combined_file_system | Man page Source code |
| compare_mic | Man page Source code |
| compare_sir | Man page Source code |
| download_patric_db | Man page Source code |
| drop_levels_mic_validation | Source code |
| droplevels.mic_validation | Man page Source code |
| ecoffs | Man page |
| essential_agreement | Man page Source code |
| example_mics | Man page |
| fill_dilution_levels | Man page Source code |
| force_mic | Man page Source code |
| genome_to_libsvm | Man page Source code |
| genomes_to_kmer_libsvm | Man page Source code |
| get_mic | Man page Source code |
| is_test_train_combined | Source code |
| kmers | Man page Source code |
| load_patric_db | Man page Source code |
| match_levels | Source code |
| mic_censor | Man page Source code |
| mic_r_breakpoint | Man page Source code |
| mic_range | Man page Source code |
| mic_s_breakpoint | Man page Source code |
| mic_uncensor | Man page Source code |
| mic_uncensor_scale | Source code |
| mic_uncensor_simple | Source code |
| move_files | Man page Source code |
| plot.mic_validation | Man page Source code |
| plot_mic_validation_multi_ab | Source code |
| plot_mic_validation_single_ab | Source code |
| print.mic_validation | Man page Source code |
| print.mic_validation_summary | Man page Source code |
| pull_PATRIC_genomes | Man page Source code |
| qc_in_range | Man page |
| qc_on_target | Man page |
| replace_multiple_slashes | Man page Source code |
| reverse_complement | Man page Source code |
| split_and_combine_files | Man page Source code |
| squeezed_index_to_str | Man page Source code |
| squeezed_mers | Man page Source code |
| standardise_mic | Man page Source code |
| strip_filename | Source code |
| subset.mic_validation | Man page Source code |
| summary.mic_validation | Man page Source code |
| table | Man page Source code |
| table.default | Man page Source code |
| table.mic_validation | Man page Source code |
| tabulate_flex | Source code |
| tidy_patric_meta_data | Man page Source code |
| train_test_filesystem | Man page Source code |
| unsqueezed_index_to_str | Man page Source code |
| unsqueezed_mers | Man page Source code |
| xgb.cv.lowmem | Man page Source code |
