NEWS.md

In MIC: Analysis of Antimicrobial Minimum Inhibitory Concentration Data

MIC 1.1.0

• revamp of the essential_agreement function to allow a more robust, flexible, and explicit approach to dealing with censored values. Now, essential_agreement (and compare_mic) have tolerate_censoring and tolerate_matched_censoring arguments to control how censored values are handled. The default values should be appropriate for most situations where the user is comparing an investigational method to a gold standard method.
• compare_mic is faster when only one ab is provided
• subset S3 method added for mic_validation
• plot.mic_validation now properly matches dilutions on the lower end of the scale
• droplevels.mic_validation method added that allows unnecessary MIC levels in a validation object to be dropped
• tidy_patric_meta_data was missing MICs when laboratory_typing_method was "MIC" (see 81c69f08)
• pull_patric_genomes now takes an ab argument to only download strains where the specified antibiotic was tested
• kmer counting is now case insensitive
• compatibility with AMR v3.0

MIC 1.0.2

• CRAN resubmission with minor changes.

MIC 1.0.1

• CRAN resubmission with minor changes to DESCRIPTION file.

MIC 1.0.0

• Initial release and CRAN submission.

MIC documentation built on June 10, 2025, 9:14 a.m.