NumRecomEvents: calculate the number of recombination events
In MPR.genotyping: Maximum Parsimony of Recombination to Infer Parental Genotypes
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
As the parental genotypes we assumed, this function can calculate how many recombination events would be needed to produce genotypes of RILs.
Usage
1
NumRecomEvents(baseData, allele.matrix, genoData = NULL)
Arguments
baseData
matirx of SNP
allele.matrix
matrix: alleles of parental genotypes
genoData
matirx of SNP which has been formatted.
Details
We wrote core code for calculating the number of recombination events in C to improve computational speed.
Value
R
the number of recombination events
See Also
Examples
1
2
3
4
5
set.seed(123)
data(myBaseData)
allele.random <- base2Allele(myBaseData)
NumRecomEvents(myBaseData,allele.random)
# 162
MPR.genotyping documentation built on May 2, 2019, 3:26 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
As the parental genotypes we assumed, this function can calculate how many recombination events would be needed to produce genotypes of RILs.
Usage
1 | NumRecomEvents(baseData, allele.matrix, genoData = NULL)
|
Arguments
baseData |
matirx of SNP |
allele.matrix |
matrix: alleles of parental genotypes |
genoData |
matirx of SNP which has been formatted. |
Details
We wrote core code for calculating the number of recombination events in C to improve computational speed.
Value
R |
the number of recombination events |
See Also
Examples
1 2 3 4 5 | set.seed(123)
data(myBaseData)
allele.random <- base2Allele(myBaseData)
NumRecomEvents(myBaseData,allele.random)
# 162
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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