build.DRUGBANK: Build DRUGBANK
In MetaDBparse: Annotate Mass over Charge Values with Databases and Formula Prediction
Description
Usage
Arguments
Details
Value
See Also
Description
Parses the DRUGBANK DB, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)
Usage
1
build.DRUGBANK(outfolder)
Arguments
outfolder
Which folder to save temp files to?
Details
Requires account creation! Then please download the full XML database from the website and place in databases/drugbank_source folder. Create it if it doesn't exist yet please!
Value
data table with parsed database
See Also
unzip
str_match
getURL
readHTMLTable,xmlToList,xmlValue,xmlEventParse
as.data.table
pboptions
MetaDBparse documentation built on May 3, 2021, 5:09 p.m.
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Description Usage Arguments Details Value See Also
Description
Parses the DRUGBANK DB, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)
Usage
1 | build.DRUGBANK(outfolder)
|
Arguments
outfolder |
Which folder to save temp files to? |
Details
Requires account creation! Then please download the full XML database from the website and place in databases/drugbank_source folder. Create it if it doesn't exist yet please!
Value
data table with parsed database
See Also
unzip
str_match
getURL
readHTMLTable,xmlToList,xmlValue,xmlEventParse
as.data.table
pboptions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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