build.KEGG: Build KEGG

In MetaDBparse: Annotate Mass over Charge Values with Databases and Formula Prediction

Description

Parses the KEGG DB, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)

Usage

build.KEGG(outfolder, testMode = FALSE)

Arguments

outfolder	Which folder to save temp files to?
testMode	run in test mode? Only parses first ten compounds

Value

data table with parsed database

See Also

pbapply keggFind,keggGet getURL str_match rbindlist load.molecules,get.smiles

Examples

## Not run: build.KEGG(outfolder=tempdir(), testMode=TRUE)

MetaDBparse documentation built on May 3, 2021, 5:09 p.m.